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Analysis Flow
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Data Analysis
Analysis Flow
1. Select data type
Read Counts
FPKM
2. Upload expression data file
Example
3. Upload sample information
Example
4. The organism of the input data
Homo sapiens
Bovine
Mus musculus
Drosophila melanogaster
5. The hypothesis correction method
BH < Benjamini-Hochberg
BY < Benjamini-Yekutieli
holm < Holm's step-down procedure
hochberg < Hochberg's step-up procedure
hommel < Hommel's procedure
bonferroni < Bonferroni correction
none
6. Input threshold for screening differential genes
log2(FC) threshold (NOTE: |log2FC| > threshold. It is generally 0.58, 1 or 2 obtained from 10.1073/pnas.0502674102 and 10.5194/aab-52-65-2009)
padj threshold (NOTE: padj < threshold. It is generally 0.05 obtained from 10.5194/aab-52-65-2009)
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